CLC Main Workbench 5.0

CLC Main Workbench 5.0

User Rating: Fair (0.00/5)

USD 120.00
CLC bio A/S|More programs
January 30th, 2012

See full specifications

Download Now

90.00 MB|0 downloads

CLC Main Workbench 5.0 Description

CLC Main Workbench 5.0 is made to be a smart and proper program which creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with smooth data management, and excellent graphical viewing and output options. 

Major Features:
  1. Project and data management:
    • Full integration of data input, data management, calculation results, and data export
    • Detailed history log
    • All types of files can be saved in local projects, and launched from the program
    • Import and export of data in a large number of file formats
    • Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
    • Import of trace data files and quality scores from automated DNA sequening machines using Standard Chromatogram Format, ABI formats and PHD format (PHRED)
    • Alpha-helices and beta-sheets shown as annotations on the sequence.
    • 3D molecule view
    • Transmembrame helix prediction
    • Antigenicity
    • Secondary protein structure prediction
    • PFAM domain search
    • Web-based prediction of signal peptides and their cleavage sites (SignalP - the best tool available)
    • Hydrophobicity analyses and graphs
    • Protein charge analysis and graphs
    • Reverse translation from protein to gene (a number of translation tables)
    • Interactive translations of DNA and RNA to protein (both single sequences and alignments)
    • Proteolytic cleavage detection
    • Report of protein statistics (one or more proteins in each report)
    • Comprehensive report including a range of protein analyses in one document
    • Integrated UniProt searches (Swiss-Prot/TrEMBL)
    • Web-based lookup of sequence data in the UniProt and NCBI databases, as well as Google
  2. Bioinformatics features in Protein Workbench:
    • Flexible viewing of circular molecules.
    • Editor for graphically and algorithmically advanced primer design
    • Assembly of DNA sequence data
    • Molecular cloning
    • Automatic SNP annotation of sequences
    • Search and discovery of DNA patterns
    • Local complexity region analyses
    • Reverse translation from protein to gene, based on translation tables from a number of species
    • Advanced restriction enzyme analysis and management
    • Dot plot based analyses
    • Short form DNA statistics including a number of characteristics of a given molecule
    • NCBI sequence data search
    • Access to web info from PubMed
  3. Bioinformatics features in Gene Workbench:
    • DNA, RNA and protein sequence editor displaying both linear and circular molecules
    • DNA, RNA, and protein alignment editor
    • Interactive logos along both DNA, RNA and Protein alignments
    • Batch processing of analyses on multiple sequences in one work-step
    • Motif search
    • Pattern discovery (unknown patterns)
    • Advanced re-alignment and fix-point alignment option
    • Sequence logo graphs along DNA, RNA, and protein alignments
    • Manual annotation of sequences
    • Integrated PubMed searches
    • Web-based sequence search using BLAST
    • Dot plot based analyses
    • Local complexity region analyses and complexity plots
    • Gap fraction graphs
    • G/C content analysis and graphs
  4. Other bioinformatics features:
    • Advanced BLAST view
    • Advanced graphs view
    • Advanced histogram view
    • Advanced dot plot view
    • Search for characteristics in sequences and alignments
  5. Viewing and reporting:
  • 256 MB RAM required
  • 512 MB RAM recommended
  • 1024 x 768 display recommended
Download CLC Main Workbench 5.0
Copyright CLC Main Workbench 5.0

CLC Main Workbench 5.0 Screenshots

Download CLC Main Workbench 5.0
Join the Softwareweb
By clicking "Create my account", you are indicating that you have read and accept the terms and conditions.

You can also sign in using :   If you are an author, Click here to register.
Log in to Softwareweb
Forgot your password?
Sign in with   
Password assistance

To receive your password, enter the e-mail address for your account below.

Join the Submit Software

This information will not be published on Softwareweb. It is only used for notification services.

By clicking "Create my account", you are indicating that you have read and accept the terms and conditions.


0 of 200 characters.